Another late night, and I'm a little more than half-done. Found a couple more bugs, of course.
Finally exchanged some e-mail with Julien, the principal coder on the Bio++ project. My e-mails to the biopp dev list were getting lost in cyberspace somewhere. Not sure what to do about that. Hopefully though, Julien can answer my questions (such as to where I should submit bug reports).
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